This manuscript introduces a useful protein-stability-based fitness model for simulating protein evolution and unifying non-neutral models of molecular evolution with phylogenetic models. The model is ...

When trees and soil fungi form close associations with each other, both partners benefit. Many tree species have further enhanced this cooperation by forming a concurrent symbiosis with two different ...

New research reveals how repeated genetic changes in Hibiscus flowers have led to the loss of visually striking bullseye ...

Abstract: Phylogenetic placement, the problem of placing a “query” sequence into a precomputed phylogenetic “backbone” tree, is useful for constructing large trees, performing taxon identification of ...

The team also designed the dataset to update automatically as new phylogenetic information about birds becomes available. Crucially, similar techniques used to construct this evolutionary tree can be ...

Abstract: In bioinformatics, protein multiple sequence alignment (MSA) and phylogenetic tree construction are among the major problems for which many algorithms have been developed to improve the ...

This ambitious project has resulted in the most complete bird evolutionary tree to date. To build this comprehensive phylogenetic tree, the researchers integrated data on 9,239 bird species from ...

$ sudo apt-get update $ sudo apt-get install graphviz fonts-noto-cjk $ pip install -r requirements.txt $ fastapi dev app/main.py --port 8080 ...

Mussununga, an oligotrophic sandy savanna ecosystem, comprises distinct physiognomies along fire, water and nutrient availability gradients. Grasslands and woodlands are constrained at the opposite ...

Figure 4. Distribution of virulence genes for each phylogroup across 107 E. coli strains. A single nucleotide polymorphism (SNP)-based phylogenetic tree was constructed to examine the genetic ...